view circos_templates/circos1.conf @ 14:5a5c9a6b047b draft

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karyotype = KARYOTYPE_PATH

<ideogram>

<spacing>
# spacing between ideograms
default = 0.005r
</spacing>

# ideogram position, thickness and fill
radius           = 0.90r
thickness        = 10p
fill             = yes

#stroke_thickness = 1
#stroke_color     = black

# ideogram labels
# <<include ideogram.label.conf>>

# ideogram cytogenetic bands, if defined in the karyotype file
# <<include bands.conf>>


</ideogram>

<plots>

</plots>

<highlights>

HIGHLIGHT_BLOCK

</highlights>

<image>
dir = .
file  = OUTPUT_PNG
24bit = yes
#png = yes
#svg = yes
# radius of inscribed circle in image
radius         = 1500p
background     = white
# by default angle=0 is at 3 o'clock position
angle_offset   = -90
#angle_orientation = counterclockwise

auto_alpha_colors = yes
auto_alpha_steps  = 5
</image>


<colors>
<<include etc/colors.conf>>
</colors>

<fonts>
<<include etc/fonts.conf>>
</fonts>

##<<include ideogram.conf>>
#<<include ticks.conf>>

<ticks>
tick_label_font  = light
radius           = dims(ideogram,radius_outer)
label_offset     = 5p
label_size       = 26p
multiplier       = 1e-6
color            = black
thickness        = 1p


<tick>
spacing        = 0.1u
size           = 16p
show_label     = yes
format         = %.2f
</tick>

<tick>
spacing        = 0.01u
size           = 12p
</tick>

</ticks>


chromosomes_units           = 1000000
show_ticks       = yes
show_tick_labels = yes
chromosomes_display_default=yes

anglestep       = 0.5
minslicestep    = 10
beziersamples   = 40
debug           = no
warnings        = no
imagemap        = no

units_ok = bupr
units_nounit = n


#debug_group = ticks