Mercurial > repos > dereeper > pangenome_explorer
view COG/bac-genomics-scripts/rod_finder/blast_rod_finder_legacy.sh @ 3:e42d30da7a74 draft
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author | dereeper |
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date | Thu, 30 May 2024 11:52:25 +0000 |
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#!/bin/bash echo "###Running legacy BLASTN with subject '$1' and query '$2'" formatdb -p F -i $1 -n ROD blastall -p blastn -d ROD -i $2 -o blastn.out -e 2e-11 -F F echo "###Running blast_rod_finder.pl with query '$3' and minimum ROD size '$4'" perl blast_rod_finder.pl -q $3 -r blastn.out -m $4