view COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft

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author dereeper
date Thu, 30 May 2024 11:52:25 +0000
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>Feature EPE_c
191	310	gene
			locus_tag	EPE_c00010
191	310	misc_RNA
			inference	COORDINATES:profile:Infernal:1.1
			product	Thr_leader
336	2798	gene
			locus_tag	EPE_c00020
			gene	thrA
336	2798	CDS
			protein_id	gnl|goetting|EPE_c00020
			EC_number	1.1.1.3
			EC_number	2.7.2.4
			inference	ab initio prediction:Prodigal:2.60
			inference	similar to AA sequence:K-12_MG1655:NP_414543.1
			product	bifunctional aspartokinase/homoserine dehydrogenase 1
3168	4697	gene
			locus_tag	EPE_c00030
			gene	rrsH
3168	4697	rRNA
			inference	COORDINATES:profile:RNAmmer:1.2
			product	16S ribosomal RNA
4771	4847	gene
			locus_tag	EPE_c00040
			pseudo
4771	4847	tRNA
			inference	COORDINATES:profile:Aragorn:1.2
			product	tRNA-Pseudo-xxx
			pseudo
7154	5010	gene
			locus_tag	EPE_c00050
			gene	fadJ
7154	5010	CDS
			protein_id	gnl|goetting|EPE_c00050
			EC_number	1.1.1.35
			EC_number	4.2.1.17
			EC_number	5.1.2.3
			EC_number	5.3.3.8
			inference	ab initio prediction:Prodigal:2.60
			inference	similar to AA sequence:K-12_MG1655:NP_416843.1
			product	fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase
7068	7430	gene
			locus_tag	EPE_c00060
			gene	ssrA
7068	7430	tmRNA
			inference	COORDINATES:profile:Aragorn:1.2
			product	transfer-messenger RNA, SsrA
7513	8883	repeat_region
			rpt_family	CRISPR
			score	23
8979	9275	gene
			locus_tag	EPE_c00080
8979	9275	CDS
			protein_id	gnl|goetting|EPE_c00080
			inference	ab initio prediction:Prodigal:2.60
			inference	similar to AA sequence:K-12_MG1655:NP_414546.1
			note	DUF2502 family putative periplasmic protein
			product	hypothetical protein
>Feature EPE_89p
61	369	gene
			pseudo
			locus_tag	EPE_89p00010
			gene	ydhA
			gene_desc	hypothetical protein fragment