Mercurial > repos > dereeper > pangenome_explorer
view COG/bac-genomics-scripts/tbl2tab/example.tbl @ 3:e42d30da7a74 draft
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| author | dereeper |
|---|---|
| date | Thu, 30 May 2024 11:52:25 +0000 |
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>Feature EPE_c 191 310 gene locus_tag EPE_c00010 191 310 misc_RNA inference COORDINATES:profile:Infernal:1.1 product Thr_leader 336 2798 gene locus_tag EPE_c00020 gene thrA 336 2798 CDS protein_id gnl|goetting|EPE_c00020 EC_number 1.1.1.3 EC_number 2.7.2.4 inference ab initio prediction:Prodigal:2.60 inference similar to AA sequence:K-12_MG1655:NP_414543.1 product bifunctional aspartokinase/homoserine dehydrogenase 1 3168 4697 gene locus_tag EPE_c00030 gene rrsH 3168 4697 rRNA inference COORDINATES:profile:RNAmmer:1.2 product 16S ribosomal RNA 4771 4847 gene locus_tag EPE_c00040 pseudo 4771 4847 tRNA inference COORDINATES:profile:Aragorn:1.2 product tRNA-Pseudo-xxx pseudo 7154 5010 gene locus_tag EPE_c00050 gene fadJ 7154 5010 CDS protein_id gnl|goetting|EPE_c00050 EC_number 1.1.1.35 EC_number 4.2.1.17 EC_number 5.1.2.3 EC_number 5.3.3.8 inference ab initio prediction:Prodigal:2.60 inference similar to AA sequence:K-12_MG1655:NP_416843.1 product fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase 7068 7430 gene locus_tag EPE_c00060 gene ssrA 7068 7430 tmRNA inference COORDINATES:profile:Aragorn:1.2 product transfer-messenger RNA, SsrA 7513 8883 repeat_region rpt_family CRISPR score 23 8979 9275 gene locus_tag EPE_c00080 8979 9275 CDS protein_id gnl|goetting|EPE_c00080 inference ab initio prediction:Prodigal:2.60 inference similar to AA sequence:K-12_MG1655:NP_414546.1 note DUF2502 family putative periplasmic protein product hypothetical protein >Feature EPE_89p 61 369 gene pseudo locus_tag EPE_89p00010 gene ydhA gene_desc hypothetical protein fragment