Mercurial > repos > dereeper > pangenome_explorer

view panexplorer_sbatch.sh @ 3:e42d30da7a74 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Thu, 30 May 2024 11:52:25 +0000
parents
children
line wrap: on
line source

#!/bin/bash

#SBATCH --job-name=panexplorer
#SBATCH --cpus-per-task=18
#SBATCH --mem-per-cpu=20G
#SBATCH --partition=supermem

module load singularity/4.0.1
export PANEX_PATH=$PWD

singularity exec $PANEX_PATH/singularity/panexplorer.sif snakemake --cores 1 -s Snakemake_files/Snakefile_pggb_heatmap_upset