# HG changeset patch
# User dereeper
# Date 1746989959 0
# Node ID 8918456081007cc859455419c5e3dc82ca7ae95f
# Parent  f6afd1efb86b95b40b26d082faaf220a09df1cd1
Uploaded

diff -r f6afd1efb86b -r 891845608100 PanExplorer.xml
--- a/PanExplorer.xml	Thu Feb 27 17:57:52 2025 +0000
+++ b/PanExplorer.xml	Sun May 11 18:59:19 2025 +0000
@@ -21,6 +21,7 @@
 cat config.yaml >$logfile;
 
 touch $vcf;
+touch $vntr_matrix;
 
 #if $software=="pgap"
     snakemake --cores 1 --config identity=$min_identity -s \$PANEX_PATH/Snakemake_files/Snakefile_wget_PGAP_heatmap_upset_COG >>$logfile 2>&1;
@@ -85,7 +86,7 @@
  <data from_work_dir="outputs/GCskew.txt" format="txt" name="gcfile" label="GC_percent"/>
  <data from_work_dir="outputs/upsetr.svg" format="svg" name="upset" label="Upset Diagram"/>
  <data from_work_dir="outputs/heatmap.svg.gz" format="svg" name="heatmap" label="Presence Absence Heatmap"/>
- <data from_work_dir="outputs/heatmap.svg.heatmap_plotly.html" format="html" name="heatmap_html" label="Presence Absence Heatmap interactive"/>
+ <data from_work_dir="outputs/vntr_matrix.tsv" format="tabular" name="vntr_matrix" label="VNTR matrix"/>
  <data from_work_dir="outputs/cog_stats.txt" format="tabular" name="outcog_stat" label="COG category counts"/>
  <data from_work_dir="outputs/cog_stats2.txt" format="tabular" name="outcog_stat2" label="COG category 2 counts"/>
  <data from_work_dir="outputs/cog_of_clusters.txt" format="tabular" name="outcog_clusters" label="COG of clusters"/>