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view PGAP-1.2.1/readme.txt @ 0:83e62a1aeeeb draft

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author dereeper
date Thu, 24 Jun 2021 13:51:52 +0000
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-=- PGAP 1.2.1 README -=-
PGAP is a Pan-Genomes Analysis Pipeline.

For the installation and usage of PGAP, please refer to manual.pdf.

There is also a brief tutorial in manual.pdf.

-=- Change Log 1.2.1 -=-
1.Fix the bug in Converter_NCBINewFormatData.pl.

-=- Change Log 1.2.0 -=-
1.A new script (Converter_NCBINewFormatData.pl) was developed for converting new format bacterial genomic data from NCBI  at ftp://ftp.ncbi.nlm.nih.gov/genomes/all

-=- Change Log 1.12 -=-
1.Fix the bug in the Perl converter Converter_draft.pl.

-=- Change Log 1.11 -=-
1.Fix the bug in the two Perl converters (Converter_finished.pl and Converter_draft.pl).

-=- Change Log 1.1 -=-
1.Add sampling strategy into the pan-genome analysis module. This strategy will efficiently reduce time cost and memory cost.
2.Revise the input data for SNP-based phylogenetic analysis