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comparison ragoo.pl @ 11:047933657fae draft

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author dereeper
date Mon, 26 Jul 2021 18:10:01 +0000
parents 2a9ac8ac9120
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10:83e37d6aee59 11:047933657fae
18 $scaffolds = $sc; 18 $scaffolds = $sc;
19 19
20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa"); 20 system("cp -rf $scaffolds $tmpdir/scaffolds.fa");
21 system("cp -rf $reference $tmpdir/reference.fa"); 21 system("cp -rf $reference $tmpdir/reference.fa");
22 chdir($tmpdir); 22 chdir($tmpdir);
23 system("$dirname/ragoo.py scaffolds.fa reference.fa >>$output 2<&1"); 23 system("$dirname/RaGOO/ragoo.py scaffolds.fa reference.fa >>$output 2<&1");
24 24
25 25
26 my %hash; 26 my %hash;
27 my $id; 27 my $id;
28 open(F,"ragoo_output/ragoo.fasta"); 28 open(F,"ragoo_output/ragoo.fasta");