Mercurial > repos > dereeper > ragoo
view ragoo.xml @ 0:90611c479c08 draft
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author | dereeper |
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date | Mon, 21 Jun 2021 21:10:57 +0000 |
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children | fb38284b11f8 |
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<tool id="ragoo" name="RaGOO" version="1.0"> <description>Order and assign scaffolds</description> <requirements> <requirement type="package" version="1.1">ragoo</requirement> </requirements> <command>perl ${__tool_directory__}/ragoo.pl $input $reference $output $output2 </command> <inputs> <param format="fasta" name="input" type="data" label="Fasta file with contigs to be ordered and oriented: "/> <param format="fasta" name="reference" type="data" label="Reference fasta file"/> </inputs> <outputs> <data format="fasta" name="output" label="Fasta output of assigned scaffolds"/> <data format="fasta" name="output2" label="Fasta output of assigned scaffolds (without Chr0)"/> </outputs> <help> For full documentation, please go to the RaGOO website : https://github.com/malonge/RaGOO </help> <citations> <citation type="doi"> 10.1186/s13059-019-1829-6 </citation> </citations> </tool>