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diff Roary/t/data/expected_mafft_input.fa.aln @ 0:c47a5f61bc9f draft
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author | dereeper |
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date | Fri, 14 May 2021 20:27:06 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Roary/t/data/expected_mafft_input.fa.aln Fri May 14 20:27:06 2021 +0000 @@ -0,0 +1,66 @@ +>1111#5_04506 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +---------atggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga +>1234_8#75_04759 +atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa +gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat +gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg +ctggattctttccggcgggatagtgctttttatacctggttgtatcgtattgcggtcaat +accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg +attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac +ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa +gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga +>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853 +atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa +gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat +gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg +ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat +accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg +attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac +ttaatgttttcagaagaactgagacagatagttttccgaactattgagtccctcccggaa +gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga +>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736 +atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa +gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat +gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg +ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat +accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg +attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac +ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa +gatttacgtatggcaatcaccttacgggagctggatggcctgagctgtgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga +>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783 +atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa +gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat +gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg +ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat +accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg +attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac +ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa +gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga +>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741 +atgagcgagcagttaacggac---gtcctggttgaacgggtccagaagggagatcagaaa +gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat +gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg +ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat +accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg +attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac +ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa +gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg +gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct +attgataataaagttcaaccgcttatcaggcgttga