diff Roary/t/data/expected_mafft_input.fa.aln @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Roary/t/data/expected_mafft_input.fa.aln	Fri May 14 20:27:06 2021 +0000
@@ -0,0 +1,66 @@
+>1111#5_04506
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------atggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga
+>1234_8#75_04759
+atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
+gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
+gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
+ctggattctttccggcgggatagtgctttttatacctggttgtatcgtattgcggtcaat
+accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
+attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
+ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
+gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853
+atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
+gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
+gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
+ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
+accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
+attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
+ttaatgttttcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
+gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736
+atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
+gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
+gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
+ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
+accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
+attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
+ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
+gatttacgtatggcaatcaccttacgggagctggatggcctgagctgtgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783
+atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa
+gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
+gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
+ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
+accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
+attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
+ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
+gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741
+atgagcgagcagttaacggac---gtcctggttgaacgggtccagaagggagatcagaaa
+gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat
+gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg
+ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat
+accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg
+attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac
+ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa
+gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg
+gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct
+attgataataaagttcaaccgcttatcaggcgttga