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diff Roary/t/data/mafft_input.fa @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Roary/t/data/mafft_input.fa	Fri May 14 20:27:06 2021 +0000
@@ -0,0 +1,59 @@
+>1234_8#75_04759
+ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA
+GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT
+GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG
+CTGGATTCTTTCCGGCGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT
+ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG
+ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC
+TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA
+GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG
+GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT
+ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA
+>1111#5_04506
+ATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATG
+GATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAAT
+AAAGTTCAACCGCTTATCAGGCGTTGA
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853
+ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA
+GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT
+GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG
+CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT
+ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG
+ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC
+TTAATGTTTTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA
+GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG
+GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT
+ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736
+ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA
+GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT
+GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG
+CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT
+ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG
+ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC
+TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA
+GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTGTGAAGAGATAGCG
+GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT
+ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783
+ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA
+GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT
+GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG
+CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT
+ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG
+ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC
+TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA
+GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG
+GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT
+ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA
+>Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741
+ATGAGCGAGCAGTTAACGGACGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA
+GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT
+GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG
+CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT
+ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG
+ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC
+TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA
+GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG
+GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT
+ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA