Mercurial > repos > dereeper > roary_plots
changeset 3:e95344f6dfc5 draft default tip
Uploaded
| author | dereeper |
|---|---|
| date | Fri, 12 Nov 2021 16:32:26 +0000 |
| parents | 3f98630a0c20 |
| children | |
| files | roary_plots.xml |
| diffstat | 1 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/roary_plots.xml Fri Nov 12 16:30:50 2021 +0000 +++ b/roary_plots.xml Fri Nov 12 16:32:26 2021 +0000 @@ -8,18 +8,19 @@ <requirement type="package" version="0.11.1">seaborn</requirement> </requirements> - <command interpreter="perl">roary_plots.sh $tree $input $heatmap -</command> +<command>${__tool_directory__}/Roary/contrib/roary_plots/roary_plots.py --labels $tree $input ;cp pangenome_matrix.png $heatmap; cp -rf pangenome_frequency.png $frequency; cp -rf pangenome_pie.png $pie</command> <inputs> - <param format="tabular" name="input" type="data" label="Gene Presence Absence matrix"/> + <param format="csv" name="input" type="data" label="Gene Presence Absence matrix"/> <param format="newick" name="tree" type="data" label="Newick"/> </inputs> <outputs> - <data format="png" name="heatmap" label="Heatmap tree"/> + <data format="png" name="heatmap" label="Pangenome matrix tree"/> + <data format="png" name="frequency" label="Pangenome frequency"/> + <data format="png" name="pie" label="Pangenome pie"/> </outputs> <help>