Mercurial > repos > dereeper > sniplay
annotate check_gwas_inputs/CheckGWASInputs.sh @ 3:345f88a8f483 draft
Uploaded
author | dereeper |
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date | Fri, 10 Jul 2015 10:38:43 -0400 |
parents | 420b57c3c185 |
children |
rev | line source |
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1 | 1 #!/bin/bash |
2 hapmap=$1 | |
3 trait=$2 | |
4 out_hapmap=$3 | |
5 out_trait=$4 | |
6 stats=$5 | |
7 | |
8 directory=`dirname $0` | |
9 mkdir tmpdir$$ | |
10 #cp -rf $input tmpdir$$/input | |
11 | |
12 perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1 | |
13 | |
14 mv tmpdir$$/out.hapmap $out_hapmap | |
15 mv tmpdir$$/out.trait $out_trait | |
16 | |
17 |