Mercurial > repos > dereeper > sniplay

annotate check_gwas_inputs/CheckGWASInputs.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
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1 #!/bin/bash
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2 hapmap=$1
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3 trait=$2
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4 out_hapmap=$3
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5 out_trait=$4
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6 stats=$5
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7
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8 directory=`dirname $0`
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9 mkdir tmpdir$$
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10 #cp -rf $input tmpdir$$/input
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12 perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1
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14 mv tmpdir$$/out.hapmap $out_hapmap
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15 mv tmpdir$$/out.trait $out_trait
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