Mercurial > repos > dereeper > sniplay

annotate SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 6:ebb0ac9b6fa9 draft

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planemo upload
author gandres
date Mon, 23 May 2016 17:49:17 -0400
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1 #!/bin/bash
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2
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3 tool_path=$(dirname $0)
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4 input=$1
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5 fileout=$2
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6 fileout_bysample=$3
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7 step=$4
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8
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9 perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step
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10
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11 cp $fileout.by_sample $fileout_bysample
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12 rm $fileout.by_sample
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13