comparison egglib/CalculateDiversityIndexes.xml @ 4:10627af23f10 draft

planemo upload

3:345f88a8f483

<tool id="calculate_diversity" name="Diversity by gene" version="2.1.6">
	<description>calculates various diversity indexes with EggLib.</description>
	<command interpreter="bash">./CalculateDiversityIndexes.sh $input $output $log
    </command>
	<inputs>
		<param format="fasta" name="input" type="data" label="Fasta alignment" help="..."/>
	</inputs>
	<outputs>
		<data format="txt" name="output" label="Diversity"/>
		<data format="txt" name="log" label="Logfile"/>
	</outputs>
    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
    <stdio>
        <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
        <exit_code range="1:" level="fatal" />
    </stdio>
    
    <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
    <tests>
        <!-- [HELP] Test files have to be in the ~/test-data directory -->
        <!-- [HELP] Multiple tests can be defined with different parameters -->
<!--
        <test>
        </test>
-->
    </tests>
	<help>
	

4:10627af23f10

<tool id="calculate_diversity" name="Diversity by gene" version="2.1.6">
	<description>calculates various diversity indexes with EggLib.</description>
    <!-- [STRONGLY RECOMMANDED] Exit code rules -->
    <stdio>
        <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
        <exit_code range="1:" level="fatal" />
    </stdio>
    <command interpreter="bash">./CalculateDiversityIndexes.sh $input $output $log
    </command>
	<inputs>
		<param format="fasta" name="input" type="data" label="Fasta alignment" help="..."/>
	</inputs>
	<outputs>
		<data format="txt" name="output" label="Diversity"/>
		<data format="txt" name="log" label="Logfile"/>
	</outputs>
    
    <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
    <tests>
        <!-- [HELP] Test files have to be in the ~/test-data directory -->
        <!-- [HELP] Multiple tests can be defined with different parameters -->
        <test>
         <param name="input" value="egglib-alignment.fa" />
         <output name="output" file="egglib-result.txt" />
        </test>
    </tests>
	<help>