Mercurial > repos > dereeper > sniplay

comparison check_gwas_inputs/CheckGWASInputs.sh @ 3:345f88a8f483 draft

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author dereeper
date Fri, 10 Jul 2015 10:38:43 -0400
parents 420b57c3c185
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2:feb40a9a8eae 3:345f88a8f483
1 #!/bin/bash
2 hapmap=$1
3 trait=$2
4 out_hapmap=$3
5 out_trait=$4
6 stats=$5
7
8 directory=`dirname $0`
9 mkdir tmpdir$$
10 #cp -rf $input tmpdir$$/input
11
12 perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1
13
14 mv tmpdir$$/out.hapmap $out_hapmap
15 mv tmpdir$$/out.trait $out_trait
16
17