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comparison ped2bed/ped2bed.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
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0:3e19d0dfcf3e 1:420b57c3c185
1 #!/bin/bash
2 ped=$1
3 map=$2
4 bed=$3
5 fam=$4
6 bim=$5
7 logs=$6
8
9 directory=`dirname $0`
10 mkdir tmpdir$$
11 cp -rf $ped tmpdir$$/input.ped
12 cp -rf $map tmpdir$$/input.map
13
14 plink --file tmpdir$$/input --out tmpdir$$/out --make-bed --noweb >>$logs 2>&1
15
16 mv tmpdir$$/out.bed $bed
17 mv tmpdir$$/out.fam $fam
18 mv tmpdir$$/out.bim $bim
19
20