Mercurial > repos > dereeper > sniplay

comparison MDSplot/mdsplot.sh @ 8:6bf69b40365c draft

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author dereeper
date Wed, 07 Feb 2018 21:37:59 -0500
parents 10627af23f10
children
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7:24336e3d3dd8 8:6bf69b40365c
5 map=$2 5 map=$2
6 fileout_label=$(date "+%Y%m%d%H%M%S") 6 fileout_label=$(date "+%Y%m%d%H%M%S")
7 fileout_matrix=$3 7 fileout_matrix=$3
8 fileout_plot=$4 8 fileout_plot=$4
9 fileout_log=$5 9 fileout_log=$5
10 groups=$6
11
10 12
11 rsync -a $ped input.ped 13 rsync -a $ped input.ped
12 rsync -a $map input.map 14 rsync -a $map input.map
15 if [ -f $groups ]
16 then
17 cp -rf $groups input.individual_info.txt
18 fi
13 19
14 perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label 20 perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label
15 21
16 rm -f input.ped input.map 22 rm -f input.ped input.map
17 23