Mercurial > repos > dereeper > sniplay
comparison Rooting/rooting.xml @ 5:ec22fcacb66c draft
planemo upload
| author | gandres |
|---|---|
| date | Mon, 15 Feb 2016 10:26:18 -0500 |
| parents | 10627af23f10 |
| children |
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| 4:10627af23f10 | 5:ec22fcacb66c |
|---|---|
| 1 <tool id="sniplay_rooting" name="Rooting" version="1.0.2"> | 1 <tool id="sniplay_rooting" name="Rooting" version="1.0.3"> |
| 2 | 2 |
| 3 <!-- [REQUIRED] Tool description displayed after the tool name --> | 3 <!-- [REQUIRED] Tool description displayed after the tool name --> |
| 4 <description> Midpoint rooting of newick tree </description> | 4 <description> Midpoint rooting of newick tree </description> |
| 5 | 5 |
| 6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> | 6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> |
| 28 Rooting.pl -i $filein -o $fileout && mv ${filein}.rooting.log $fileout_log | 28 Rooting.pl -i $filein -o $fileout && mv ${filein}.rooting.log $fileout_log |
| 29 </command> | 29 </command> |
| 30 | 30 |
| 31 <!-- [REQUIRED] Input files and tool parameters --> | 31 <!-- [REQUIRED] Input files and tool parameters --> |
| 32 <inputs> | 32 <inputs> |
| 33 <param name="filein" type="data" format="txt" optional="false" label="Fasta alignment input" /> | 33 <param name="filein" type="data" format="nwk" optional="false" label="Fasta alignment input" /> |
| 34 <param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" /> | 34 <param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" /> |
| 35 </inputs> | 35 </inputs> |
| 36 | 36 |
| 37 <!-- [REQUIRED] Output files --> | 37 <!-- [REQUIRED] Output files --> |
| 38 <outputs> | 38 <outputs> |
| 39 <data name="fileout_log" type="data" format="txt" label="${fileout_label}.log" /> | 39 <data name="fileout_log" type="data" format="txt" label="${fileout_label}.log" /> |
| 40 <data name="fileout" type="data" format="txt" label="${fileout_label}" /> | 40 <data name="fileout" type="data" format="nwk" label="${fileout_label}" /> |
| 41 </outputs> | 41 </outputs> |
| 42 | 42 |
| 43 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> | 43 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> |
| 44 <tests> | 44 <tests> |
| 45 <!-- [HELP] Test files have to be in the ~/test-data directory --> | 45 <!-- [HELP] Test files have to be in the ~/test-data directory --> |