diff admixture/admixture.xml @ 0:3e19d0dfcf3e draft

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+++ b/admixture/admixture.xml	Mon Mar 23 05:57:27 2015 -0400
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+<tool id="admixture" name="Admixture" version="1.23">
+	<description>a population structure from large SNP genotype datasets</description>
+	<requirements>
+		<requirement type="package" version="1.07">plink</requirement>
+		<requirement type="package" version="1.23">admixture</requirement>
+	</requirements>
+	<command interpreter="bash">./admixture.sh $input $outputs $logs $best_k_output $best_k_logfile $kmin $kmax
+    </command>
+	<inputs>
+		<param format="txt" name="input" type="data" label="Allelic file in Hapmap format" help="Allelic file in Hapmap format"/>
+		<param type="text" name="kmin" label="K min" value="1"/>
+		<param type="text" name="kmax" label="K max" value="5"/>
+	</inputs>
+	<outputs>
+		<data format="txt" name="best_k_output" label="Best K Output"/>
+		<data format="txt" name="best_k_logfile" label="Best K Logfile"/>
+		<data format="txt" name="outputs" label="All Outputs"/>
+		<data format="txt" name="logs" label="All Logs"/>
+	</outputs>
+	<help>
+	
+
+.. class:: infomark
+
+**Program encapsulated in Galaxy by Southgreen**
+
+.. class:: infomark
+
+**Admixture version 1.23**
+
+-----
+
+==============
+ Please cite: 
+==============
+
+"Fast model-based estimation of ancestry in unrelated individuals.", **D.H. Alexander, J. Novembre, and K. Lange.**, Genome Research, 19:1655{1664, 2009.
+
+-----
+
+===========
+ Overview:
+===========
+
+ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study).
+
+-----
+
+For further informations, please visite the Admixture_ website.
+
+
+.. _Admixture: http://www.genetics.ucla.edu/software/admixture/index.html
+	</help>
+
+</tool>