Mercurial > repos > dereeper > sniplay

diff check_gwas_inputs/CheckGWASInputs.sh @ 1:420b57c3c185 draft

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author dereeper
date Fri, 10 Jul 2015 04:39:30 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/check_gwas_inputs/CheckGWASInputs.sh	Fri Jul 10 04:39:30 2015 -0400
@@ -0,0 +1,17 @@
+#!/bin/bash
+hapmap=$1
+trait=$2
+out_hapmap=$3
+out_trait=$4
+stats=$5
+
+directory=`dirname $0`
+mkdir tmpdir$$
+#cp -rf $input tmpdir$$/input
+ 
+perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1
+
+mv tmpdir$$/out.hapmap $out_hapmap
+mv tmpdir$$/out.trait $out_trait
+
+