diff egglib/egglib-2.1.5/include/egglib-cpp/Mutation.hpp @ 1:420b57c3c185 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/egglib/egglib-2.1.5/include/egglib-cpp/Mutation.hpp	Fri Jul 10 04:39:30 2015 -0400
@@ -0,0 +1,63 @@
+/*
+    Copyright 2009-2010 Stéphane De Mita, Mathieu Siol
+
+    This file is part of the EggLib library.
+
+    EggLib is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    EggLib is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with EggLib.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#ifndef EGGLIB_MUTATION_HPP
+#define EGGLIB_MUTATION_HPP
+
+#include <vector>
+#include "Edge.hpp"
+
+namespace egglib {
+
+   /** \brief Very simple container of some information relative to a mutation
+    * 
+    * \ingroup coalesce
+    *
+    */
+    class Mutation {
+
+        public:
+    
+            /// Default constructor
+            Mutation();
+            
+            /// Age
+            //double age;
+            
+            /// Mutation index (for finding in Edge)
+            unsigned int actualSiteIndex;
+            
+            /// Position
+            double position;
+            
+            /// Segment index
+            unsigned int segmentIndex;
+            
+            /// Pointer to edge
+            //const Edge* edge;
+            
+        private:
+        
+            void init();
+
+    };
+
+}
+
+#endif