Mercurial > repos > dereeper > sniplay

diff SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 9:98c37a5d67f4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Wed, 07 Feb 2018 22:08:47 -0500
parents ebb0ac9b6fa9
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh	Wed Feb 07 22:08:47 2018 -0500
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+tool_path=$(dirname $0)
+input=$1
+fileout=$2
+fileout_bysample=$3
+step=$4
+
+perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step
+
+cp  $fileout.by_sample $fileout_bysample
+rm $fileout.by_sample
+