Mercurial > repos > dereeper > sniplay

#!/bin/bash
ped=$1
map=$2
bed=$3
fam=$4
bim=$5
logs=$6

directory=`dirname $0`
mkdir tmpdir$$
cp -rf $ped tmpdir$$/input.ped
cp -rf $map tmpdir$$/input.map

plink --file tmpdir$$/input --out tmpdir$$/out --make-bed --noweb >>$logs 2>&1

mv tmpdir$$/out.bed $bed
mv tmpdir$$/out.fam $fam
mv tmpdir$$/out.bim $bim
author	dereeper
date	Fri, 10 Jul 2015 10:38:43 -0400
parents	420b57c3c185
children