Mercurial > repos > dereeper > sniplay
view snpEff/snpEff-pipe.sh @ 0:3e19d0dfcf3e draft
Uploaded
author | dereeper |
---|---|
date | Mon, 23 Mar 2015 05:57:27 -0400 |
parents | |
children |
line wrap: on
line source
#!/bin/bash vcf=$1 genome=$2 gff=$3 output=$4 html=$5 log=$6 directory=`dirname $0` /usr/bin/perl $directory/SnpEff.pl -i $vcf -f $genome -g $gff -o $output -h $html >>$log 2>&1