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comparison VCFToolsStats/test-data/result.log @ 18:7ba803afa41b draft

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author dereeper
date Thu, 26 Feb 2015 16:02:46 -0500
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17:f21d05b9d3fe 18:7ba803afa41b
1
2 VCFtools - v0.1.12b
3 (C) Adam Auton and Anthony Marcketta 2009
4
5 Parameters as interpreted:
6 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
7 --het
8 --out vcf_stats
9 --remove-filtered-all
10
11 After filtering, kept 1 out of 1 Individuals
12 Outputting Individual Heterozygosity
13 Individual Heterozygosity: Only using biallelic SNPs.
14 After filtering, kept 4813 out of a possible 4955 Sites
15 Run Time = 0.00 seconds
16
17 VCFtools - v0.1.12b
18 (C) Adam Auton and Anthony Marcketta 2009
19
20 Parameters as interpreted:
21 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
22 --out vcf_stats
23 --TsTv-summary
24 --remove-filtered-all
25
26 After filtering, kept 1 out of 1 Individuals
27 Outputting Ts/Tv summary
28 Ts/Tv ratio: 1.883
29 After filtering, kept 4813 out of a possible 4955 Sites
30 Run Time = 0.00 seconds
31
32 VCFtools - v0.1.12b
33 (C) Adam Auton and Anthony Marcketta 2009
34
35 Parameters as interpreted:
36 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
37 --missing-indv
38 --out vcf_stats
39 --remove-filtered-all
40
41 After filtering, kept 1 out of 1 Individuals
42 Outputting Individual Missingness
43 After filtering, kept 4813 out of a possible 4955 Sites
44 Run Time = 0.00 seconds