diff snmf.sh @ 0:9a1729b89405 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snmf.sh	Tue May 17 10:51:34 2016 -0400
@@ -0,0 +1,24 @@
+#!/bin/bash
+vcf=$1
+outputs=$2
+logs=$3
+best_k_output=$4
+best_k_logfile=$5
+kmin=$6
+kmax=$7
+groups=$8
+threshold_group=$9
+
+directory=`dirname $0`
+mkdir tmpdir$$
+
+ 
+perl $directory/Snmf.pl -i $vcf -o $outputs -k $kmin -m $kmax -d tmpdir$$ -t $threshold_group
+
+mv tmpdir$$/output $best_k_output
+mv tmpdir$$/log $best_k_logfile
+mv tmpdir$$/outputs.Q $outputs
+mv tmpdir$$/logs $logs
+mv tmpdir$$/groups $groups
+
+