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view snmf.sh @ 7:22aee300afdf draft

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planemo upload commit 1984e785e8d5efa4685389ab8ca4c73346b4de93
author dereeper
date Wed, 18 Apr 2018 05:44:40 -0400
parents 9a1729b89405
children c94c31bde773
line wrap: on
line source

#!/bin/bash
vcf=$1
outputs=$2
logs=$3
best_k_output=$4
best_k_logfile=$5
kmin=$6
kmax=$7
groups=$8
threshold_group=$9

directory=`dirname $0`
mkdir tmpdir$$

 
perl $directory/Snmf.pl -i $vcf -o $outputs -k $kmin -m $kmax -d tmpdir$$ -t $threshold_group

mv tmpdir$$/output $best_k_output
mv tmpdir$$/log $best_k_logfile
mv tmpdir$$/outputs.Q $outputs
mv tmpdir$$/logs $logs
mv tmpdir$$/groups $groups