Mercurial > repos > dereeper > snpeff_from_gff_vcf

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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author dereeper
date Mon, 16 Apr 2018 08:56:29 -0400
parents abde5b0387c8
children
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#!/bin/bash
vcf=$1
genome=$2
gff=$3
output=$4
html=$5
log=$6

directory=`dirname $0`
 
/usr/bin/perl $directory/SnpEff.pl -i $vcf -f $genome -g $gff -o $output -h $html >>$log 2>&1