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comparison tassel/tassel.xml @ 1:1dc58d808e72 draft

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author dereeper
date Thu, 26 Feb 2015 01:18:27 -0500
parents 0aeea77b924a
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0:0aeea77b924a 1:1dc58d808e72
1 <tool id="Tassel" name="Tassel"> 1 <tool id="Tassel" name="Tassel" version="5.0">
2 <description> Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. </description> 2 <description> Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. </description>
3 <!--<command interpreter="bash"> 3 <requirements>
4 ./tassel.sh $hapmap $trait $structure $filter $output1 $output2 $log 4 <requirement type="package" version="5.0">tassel</requirement>
5 </command> 5 </requirements>
6 -->
7 <command interpreter="bash">./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ 6 <command interpreter="bash">./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/
8 #if $analysis_opts.fonction_selector == "mlm": 7 #if $analysis_opts.fonction_selector == "mlm":
9 -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq 8 -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq
10 -fork2 -r $analysis_opts.trait 9 -fork2 -r $analysis_opts.trait
11 #if $analysis_opts.add_structure_file.additional_file_selector == "yes": 10 #if $analysis_opts.add_structure_file.additional_file_selector == "yes":