Mercurial > repos > dereeper > tassel5
comparison tassel/tassel.xml @ 1:1dc58d808e72 draft
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author | dereeper |
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date | Thu, 26 Feb 2015 01:18:27 -0500 |
parents | 0aeea77b924a |
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0:0aeea77b924a | 1:1dc58d808e72 |
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1 <tool id="Tassel" name="Tassel"> | 1 <tool id="Tassel" name="Tassel" version="5.0"> |
2 <description> Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. </description> | 2 <description> Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. </description> |
3 <!--<command interpreter="bash"> | 3 <requirements> |
4 ./tassel.sh $hapmap $trait $structure $filter $output1 $output2 $log | 4 <requirement type="package" version="5.0">tassel</requirement> |
5 </command> | 5 </requirements> |
6 --> | |
7 <command interpreter="bash">./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ | 6 <command interpreter="bash">./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ |
8 #if $analysis_opts.fonction_selector == "mlm": | 7 #if $analysis_opts.fonction_selector == "mlm": |
9 -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq | 8 -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq |
10 -fork2 -r $analysis_opts.trait | 9 -fork2 -r $analysis_opts.trait |
11 #if $analysis_opts.add_structure_file.additional_file_selector == "yes": | 10 #if $analysis_opts.add_structure_file.additional_file_selector == "yes": |