# HG changeset patch
# User dereeper
# Date 1535114029 14400
# Node ID e94b8b64929cbd66900d9012e796c03a16888efb
# Parent  652aafd8806067e1068a12b83c4f7cc9b7825045
planemo upload commit 9f362f944b3ce480662bec519a3d7c7616454b4c

diff -r 652aafd88060 -r e94b8b64929c tassel.sh
--- a/tassel.sh	Mon Apr 16 08:54:41 2018 -0400
+++ b/tassel.sh	Fri Aug 24 08:33:49 2018 -0400
@@ -23,6 +23,7 @@
 then
  run_pipeline.pl $* >> $log1 2>&1
  mv "$galaxyOutDir/TASSELGLM1.txt" $out1
+ if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
  mv "$galaxyOutDir/TASSELGLM2.txt" $out2
 fi
 
@@ -30,6 +31,7 @@
 then
  run_pipeline.pl $* >> $log1 2>&1
  mv "$galaxyOutDir/TASSELMLM1.txt" $out1
+ if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
  mv "$galaxyOutDir/TASSELMLM2.txt" $out2
  mv "$galaxyOutDir/TASSELMLM3.txt" $out3
 fi
@@ -44,4 +46,5 @@
 then
  run_pipeline.pl $* >> $log1 2>&1
  mv "$galaxyOutDir/kinship.txt" $out1
+ if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
 fi