# HG changeset patch
# User dereeper
# Date 1641204440 0
# Node ID e57b034c1fae671823264d7e8f40d228b92c1e6b
# Parent  1306b28be7c3a19352f0c7dfc0e4d941d4735f11
Uploaded

diff -r 1306b28be7c3 -r e57b034c1fae uniqprimer.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/uniqprimer.sh	Mon Jan 03 10:07:20 2022 +0000
@@ -0,0 +1,33 @@
+#!/bin/bash
+include=$1
+exclude=$2
+product_size_range=$3
+primer_size=$4
+min_size=$5
+max_size=$6
+crossvalidate=$7
+outfile=$8
+log=$9
+fasta=${10}
+
+directory=`dirname $0`
+other_inputs_line=""
+
+j=1
+for i in $*
+do
+	if [[ $j -ge 11 ]]
+	then other_inputs_line=${other_inputs_line}" "$i
+	fi
+	j=$((j+1))
+done
+
+
+if [[ $crossvalidate == "Yes" ]] 
+then python $directory/uniqprimer-0.5.0/uniqprimer.py -i $include -x $exclude --productsizerange $product_size_range --primersize $primer_size --minprimersize $min_size --crossvalidate --keeptempfiles --maxprimersize $max_size -o $outfile -f $fasta -l $log $other_inputs_line >>$log 2>&1
+elif [[ $crossvalidate = "No" ]]
+then python $directory/uniqprimer-0.5.0/uniqprimer.py -i $include -x $exclude --productsizerange $product_size_range --primersize $primer_size --minprimersize $min_size --keeptempfiles --maxprimersize $max_size -o $outfile -f $fasta -l $log $other_inputs_line >>$log 2>&1
+fi
+
+
+