Mercurial > repos > devteam > analyze_covariates

diff analyze_covariates.xml @ 1:1d427770e7ec draft

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Uploaded tool wrapper XML with correct specification of java .jar path.
author devteam
date Wed, 02 Apr 2014 15:21:06 -0400
parents be6bede22459
children 738bc749f9a3
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--- a/analyze_covariates.xml	Tue Apr 01 10:48:14 2014 -0400
+++ b/analyze_covariates.xml	Wed Apr 02 15:21:06 2014 -0400
@@ -11,7 +11,7 @@
    --stdout "${output_log}"
    --html_report_from_directory "${output_html}" "${output_html.files_path}"
    -p 'java 
-    -jar "${JAVA_JAR_PATH}/AnalyzeCovariates.jar"
+    -jar "\$JAVA_JAR_PATH/AnalyzeCovariates.jar"
     -recalFile "${input_recal}"
     -outputDir "${output_html.files_path}"
     ##--num_threads 4 ##hard coded, for now