# HG changeset patch
# User devteam
# Date 1396469077 14400
# Node ID 738bc749f9a3ee9d605ca20294114cbda3c54ce7
# Parent  1d427770e7ec6bd01b21cc70f5daa5567fd70fa3
Added a dependency on R, since the Analyze Covariates tool generates an R script for plotting residual error.

diff -r 1d427770e7ec -r 738bc749f9a3 analyze_covariates.xml
--- a/analyze_covariates.xml	Wed Apr 02 15:21:06 2014 -0400
+++ b/analyze_covariates.xml	Wed Apr 02 16:04:37 2014 -0400
@@ -2,6 +2,7 @@
   <description>- draw plots</description>
   <requirements>
       <requirement type="package" version="1.4">gatk</requirement>
+      <requirement type="package" version="2.11.0">R</requirement>
   </requirements>
   <macros>
     <import>gatk_macros.xml</import>
diff -r 1d427770e7ec -r 738bc749f9a3 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Apr 02 15:21:06 2014 -0400
+++ b/tool_dependencies.xml	Wed Apr 02 16:04:37 2014 -0400
@@ -1,6 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="gatk" version="1.4">
-      <repository changeset_revision="ec95ec570854" name="package_gatk_1_4" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <package name="gatk" version="1.4">
+        <repository changeset_revision="ec95ec570854" name="package_gatk_1_4" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="R" version="2.11.0">
+        <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>