# HG changeset patch
# User iuc
# Date 1673424864 0
# Node ID e4490b16f0d71e6103b9c7491ec7b0fe6f068cd3
# Parent  befc9dad4ca859f24706e50b3cc74e7d5e59646e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/bamtools/bamtools commit 29fe5251fcc37a22a1ce479d7a39f5007a4f02ec

diff -r befc9dad4ca8 -r e4490b16f0d7 bamtools.xml
--- a/bamtools.xml	Sat Nov 27 10:02:03 2021 +0000
+++ b/bamtools.xml	Wed Jan 11 08:14:24 2023 +0000
@@ -4,9 +4,10 @@
     <macros>
           <import>macros.xml</import>
     </macros>
-    <expand macro="requirements" />
-    <command detect_errors="exit_code">
-        <![CDATA[
+    <expand macro="requirements">
+        <requirement type="package" version="1.16.1">samtools</requirement>
+    </expand>
+    <command detect_errors="exit_code"><![CDATA[
             ##set up input files
             ln -s '${input_bams}' localbam.bam &&
             ln -s '${input_bams.metadata.bam_index}' localbam.bam.bai &&
@@ -60,8 +61,7 @@
                 -out '$out_file1'
             #end if
             -in localbam.bam
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="input_bams" type="data" format="bam" label="BAM dataset(s) to filter" />
         <conditional name="analysis_type">
diff -r befc9dad4ca8 -r e4490b16f0d7 macros.xml
--- a/macros.xml	Sat Nov 27 10:02:03 2021 +0000
+++ b/macros.xml	Wed Jan 11 08:14:24 2023 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">2.5.1</token>
+    <token name="@TOOL_VERSION@">2.5.2</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>
-            <requirement type="package" version="1.4.1">samtools</requirement>
+            <yield />
         </requirements>
     </xml>
     <xml name="citations">
@@ -13,4 +13,4 @@
             <citation type="doi">10.1093/bioinformatics/btr174</citation>
         </citations>
     </xml>
-</macros>
\ No newline at end of file
+</macros>