Mercurial > repos > devteam > bamtools
changeset 7:ddb22028b552 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit 862f05b5053f55def8007194a702019418697cb5
| author | iuc |
|---|---|
| date | Fri, 13 Jan 2023 12:17:31 +0000 |
| parents | e4490b16f0d7 |
| children | 970e6333f07e |
| files | bamtools.xml macros.xml |
| diffstat | 2 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/bamtools.xml Wed Jan 11 08:14:24 2023 +0000 +++ b/bamtools.xml Fri Jan 13 12:17:31 2023 +0000 @@ -1,6 +1,6 @@ <?xml version="1.0"?> -<tool id="bamtools" name="Convert, Merge, Randomize" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> - <description>BAM datasets and perform other transformations</description> +<tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> + <description>datasets in various ways</description> <macros> <import>macros.xml</import> </macros> @@ -146,6 +146,7 @@ <when input="analysis_type.format_type.format_type_selector" value="fastq" format="fastq" /> <when input="analysis_type.format_type.format_type_selector" value="sam" format="sam" /> <when input="analysis_type.format_type.format_type_selector" value="pileup" format="pileup" /> + <when input="analysis_type.format_type.format_type_selector" value="json" format="json" /> <when input="analysis_type.analysis_type_selector" value="count" format="tabular" /> <when input="analysis_type.analysis_type_selector" value="coverage" format="tabular" /> <when input="analysis_type.analysis_type_selector" value="merge" format="bam" /> @@ -192,14 +193,13 @@ **Convert** -Converts BAM dataset(s) into BED, FASTA, FASTQ, JSON, Pileup, SAM, or YAML formats. Note that the conversion to the pileup format requires providing a reference sequence either -cashed at this Galaxy instance, or provided by you as a FASTA dataset from History. +Converts BAM dataset(s) into BED, FASTA, FASTQ, JSON, Pileup, SAM, or YAML formats. Note that the conversion to the pileup format requires providing a reference sequence either cached on this Galaxy instance, or provided by you as a FASTA dataset from History. ----- **Count** -Counts a number of alignments in a BAM dataset(s). +Counts the number of alignments in a BAM dataset(s). ----- @@ -211,13 +211,13 @@ **Header** -Prints header from a BAM dataset(s). +Prints the header of a BAM dataset. ------ **Merge** -Merges multiple BAM datasets into a single one. Obviously, you need to select multiple BAMs as input, which is done by pressing the "**Add new BAM dataset(s) to filter**" button. +Merges multiple BAM datasets into a single one. ------
--- a/macros.xml Wed Jan 11 08:14:24 2023 +0000 +++ b/macros.xml Fri Jan 13 12:17:31 2023 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">2.5.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>