# HG changeset patch
# User devteam
# Date 1655137248 0
# Node ID 21898544368b1889ba8b49d208bed95bc431cbf9
# Parent 2cedec3759e49dae95d3e7ad15011f69de17bad0
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/basecoverage commit d7b1a60c0aecc46b7f625c3e32f882562b512fd9
diff -r 2cedec3759e4 -r 21898544368b operation_filter.py
--- a/operation_filter.py Thu Jun 22 18:40:06 2017 -0400
+++ b/operation_filter.py Mon Jun 13 16:20:48 2022 +0000
@@ -45,22 +45,7 @@
error_map[name] = "A dataset of the appropriate type is required"
-# Commented out by INS, 5/30/2007. What is the PURPOSE of this?
-def exec_after_process(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
- """Verify the output data after each run"""
- for data in out_data.values():
- try:
- if stderr and len( stderr ) > 0:
- raise Exception( stderr )
- except Exception:
- data.blurb = JOB_ERROR
- data.state = JOB_ERROR
-
-
def exec_after_merge(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
- exec_after_process(
- app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
-
# strip strand column if clusters were merged
for data in out_data.values():
if param_dict['returntype'] is True:
@@ -72,9 +57,6 @@
def exec_after_cluster(app, inp_data, out_data, param_dict, tool=None, stdout=None, stderr=None):
- exec_after_process(
- app, inp_data, out_data, param_dict, tool=tool, stdout=stdout, stderr=stderr)
-
# strip strand column if clusters were merged
if param_dict["returntype"] == '1':
for data in out_data.values():