Mercurial > repos > devteam > blast_datatypes
comparison blast.py @ 10:5482a8cd0f36 draft
Uploaded v0.0.20 with new citation information
author | peterjc |
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date | Wed, 25 Feb 2015 10:52:35 -0500 |
parents | 2bda64d39931 |
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9:2bda64d39931 | 10:5482a8cd0f36 |
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74 sleep(1) | 74 sleep(1) |
75 if not os.path.isfile(f): | 75 if not os.path.isfile(f): |
76 log.error("BLAST XML file %s missing" % f) | 76 log.error("BLAST XML file %s missing" % f) |
77 raise ValueError("BLAST XML file %s missing" % f) | 77 raise ValueError("BLAST XML file %s missing" % f) |
78 h = open(f) | 78 h = open(f) |
79 body = False | |
80 header = h.readline() | 79 header = h.readline() |
81 if not header: | 80 if not header: |
82 out.close() | 81 out.close() |
83 h.close() | 82 h.close() |
84 #Retry, could be transient error with networked file system... | 83 #Retry, could be transient error with networked file system... |