comparison bowtie2_wrapper.xml @ 30:03e9b2fbc005 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit 3ae56dd669038a65c3f60ba64c67cbefb254ab5e

29:f6877ad76b00

<tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy1" profile="20.05">
    <description>- map reads against reference genome</description>
    <macros>
        <import>bowtie2_macros.xml</import>
    </macros>
    <xrefs>
        <xref type="bio.tools">bowtie2</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">bowtie2</requirement>
        <requirement type="package" version="1.14">samtools</requirement>
    </requirements>
    <version_command>bowtie2 --version</version_command>
    <command detect_errors="exit_code"><![CDATA[
## Use pipefail if available to quit with first non-zero exit code
set -o | grep -q pipefail && set -o pipefail;

30:03e9b2fbc005

<tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
    <description>- map reads against reference genome</description>
    <macros>
        <import>bowtie2_macros.xml</import>
    </macros>
    <xrefs>
        <xref type="bio.tools">bowtie2</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">bowtie2</requirement>
        <requirement type="package" version="1.16.1">samtools</requirement>
    </requirements>
    <version_command>bowtie2 --version</version_command>
    <command detect_errors="exit_code"><![CDATA[
## Use pipefail if available to quit with first non-zero exit code
set -o | grep -q pipefail && set -o pipefail;