Mercurial > repos > devteam > bowtie2

changeset 8:82414e16b6bd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit 637e614b544bf3cd75306f27bcfe537cacae4a58
author devteam
date Mon, 16 Nov 2015 14:38:37 -0500
parents 4f92dccc808a
children 019c2a81547a
files bowtie2_wrapper.xml tool_dependencies.xml
diffstat 2 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/bowtie2_wrapper.xml	Wed Nov 11 12:04:23 2015 -0500
+++ b/bowtie2_wrapper.xml	Mon Nov 16 14:38:37 2015 -0500
@@ -1,13 +1,12 @@
-<tool id="bowtie2" name="Bowtie2" version="0.6">
-    <!-- Wrapper compatible with Bowtie version 2.2.4 -->
+<tool id="bowtie2" name="Bowtie2" version="2.2.6">
     <description>- map reads against reference genome</description>
     <macros>
         <import>read_group_macros.xml</import>
     </macros>
     <version_command>bowtie2 --version</version_command>
     <requirements>
-        <requirement type="package" version="2.2.4">bowtie2</requirement>
-        <requirement type="package" version="0.1.18">samtools</requirement>
+        <requirement type="package" version="2.2.6">bowtie2</requirement>
+        <requirement type="package" version="1.2">samtools</requirement>
     </requirements>
     <command>
 
--- a/tool_dependencies.xml	Wed Nov 11 12:04:23 2015 -0500
+++ b/tool_dependencies.xml	Mon Nov 16 14:38:37 2015 -0500
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="bowtie2" version="2.2.4">
-      <repository changeset_revision="172979b6bf77" name="package_bowtie_2_2_4" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <package name="bowtie2" version="2.2.6">
+      <repository changeset_revision="6d6cca69a34a" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="0.1.18">
-      <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>