# HG changeset patch
# User devteam
# Date 1437498219 14400
# Node ID a3825c73805c3a7e595e30844520e619d6f6e6ec
# Parent  065886169d72b5035d120ba98ced236c3e8efe90
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty

diff -r 065886169d72 -r a3825c73805c bowtie_color_wrapper.xml
--- a/bowtie_color_wrapper.xml	Fri Feb 21 12:41:19 2014 -0500
+++ b/bowtie_color_wrapper.xml	Tue Jul 21 13:03:39 2015 -0400
@@ -712,5 +712,8 @@
   --col-keepends   Keep the extreme-end nucleotides and qualities when decoding colorspace 
                    alignments. [off]
 
-  </help>
+    </help>
+    <citations>
+        <citation type="doi">10.1186/gb-2009-10-3-r25</citation>
+    </citations>
 </tool>
diff -r 065886169d72 -r a3825c73805c tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Feb 21 12:41:19 2014 -0500
+++ b/tool_dependencies.xml	Tue Jul 21 13:03:39 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="bowtie" version="0.12.7">
-        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>