Mercurial > repos > devteam > bowtie_wrappers
comparison tool_dependencies.xml @ 3:9ca609a2a421 draft
Uploaded complex repository dependency for bowtie 0.12.7.
author | devteam |
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date | Fri, 21 Feb 2014 12:40:39 -0500 |
parents | 0c7e4eadfb3c |
children | df86f29bedee |
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2:42c4463baaad | 3:9ca609a2a421 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 <package name="bowtie" version="0.12.7"> | 3 <package name="bowtie" version="0.12.7"> |
4 <install version="1.0"> | 4 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> |
5 <actions> | |
6 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action> | |
7 <action type="shell_command">make</action> | |
8 <action type="move_file"> | |
9 <source>bowtie</source> | |
10 <destination>$INSTALL_DIR/bin</destination> | |
11 </action> | |
12 <action type="move_file"> | |
13 <source>bowtie-build</source> | |
14 <destination>$INSTALL_DIR/bin</destination> | |
15 </action> | |
16 <action type="move_file"> | |
17 <source>bowtie-inspect</source> | |
18 <destination>$INSTALL_DIR/bin</destination> | |
19 </action> | |
20 <action type="set_environment"> | |
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
22 </action> | |
23 </actions> | |
24 </install> | |
25 <readme> | |
26 Compiling Bowtie requires libpthread to be present on your system. | |
27 </readme> | |
28 </package> | 5 </package> |
29 </tool_dependency> | 6 </tool_dependency> |
30 |