Mercurial > repos > devteam > bwa
comparison bwa_macros.xml @ 21:8d2a528a9513 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
| author | iuc |
|---|---|
| date | Tue, 10 Apr 2018 18:41:16 -0400 |
| parents | 4f774c1e6049 |
| children | 3fe632431b68 |
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| 20:4f774c1e6049 | 21:8d2a528a9513 |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <import>read_group_macros.xml</import> | 2 <import>read_group_macros.xml</import> |
| 3 | 3 |
| 4 <token name="@VERSION@">0.7.17</token> | 4 <token name="@VERSION@">0.7.17</token> |
| 5 | |
| 6 <token name="@pipefail@"><![CDATA[set -o | grep -q pipefail && set -o pipefail;]]></token> | |
| 5 | 7 |
| 6 <token name="@set_rg_string@"> | 8 <token name="@set_rg_string@"> |
| 7 #set $rg_string = "@RG\\tID:" + str($rg_id) | 9 #set $rg_string = "@RG\\tID:" + str($rg_id) |
| 8 #set $rg_string += $format_read_group("\\tSM:", $rg_sm) | 10 #set $rg_string += $format_read_group("\\tSM:", $rg_sm) |
| 9 #set $rg_string += $format_read_group("\\tPL:", $rg_pl) | 11 #set $rg_string += $format_read_group("\\tPL:", $rg_pl) |