comparison bwa.xml @ 7:d8c9597bfb09 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit ddb8bdb9d62399f086b06b3469450d0aad2113bd

6:09a7281d24c5

<?xml version="1.0"?>
<tool id="bwa" name="Map with BWA" version="0.3.1">
  <description>- map short reads (&lt; 100 bp) against reference genome</description>
  <macros>
    <import>read_group_macros.xml</import>
    <import>bwa_macros.xml</import>
    <token name="@command_options@">

      <when value="do_not_set">
        <!-- do nothing -->
      </when>
    </xml>
  </macros>

  <requirements>
    <requirement type="package" version="0.7.10.039ea20639">bwa</requirement>
    <requirement type="package" version="1.1">samtools</requirement>
  </requirements>
  <expand macro="stdio" />
  <command>
    #set $reference_fasta_filename = "localref.fa"

    #if str( $reference_source.reference_source_selector ) == "history":

7:d8c9597bfb09

<?xml version="1.0"?>
<tool id="bwa" name="Map with BWA" version="0.4.1">
  <description>- map short reads (&lt; 100 bp) against reference genome</description>
  <macros>
    <import>read_group_macros.xml</import>
    <import>bwa_macros.xml</import>
    <token name="@command_options@">

      <when value="do_not_set">
        <!-- do nothing -->
      </when>
    </xml>
  </macros>
  <expand macro="requirements" />
  <expand macro="stdio" />
  <command>
    #set $reference_fasta_filename = "localref.fa"

    #if str( $reference_source.reference_source_selector ) == "history":