diff bwa_macros.xml @ 7:d8c9597bfb09 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bwa commit ddb8bdb9d62399f086b06b3469450d0aad2113bd

--- a/bwa_macros.xml	Tue Jul 21 14:12:49 2015 -0400
+++ b/bwa_macros.xml	Tue Nov 03 09:36:45 2015 -0500
@@ -1,20 +1,27 @@
 <macros>
   <import>read_group_macros.xml</import>
   <token name="@set_rg_string@">
-      #set $rg_string = "@RG\tID:" + str($rg_id)
-      #set $rg_string += $format_read_group("\tSM:", $rg_sm)
-      #set $rg_string += $format_read_group("\tPL:", $rg_pl)
-      #set $rg_string += $format_read_group("\tLB:", $rg_lb)
-      #set $rg_string += $format_read_group("\tCN:", $rg_cn)
-      #set $rg_string += $format_read_group("\tDS:", $rg_ds)
-      #set $rg_string += $format_read_group("\tDT:", $rg_dt)
-      #set $rg_string += $format_read_group("\tFO:", $rg_fo)
-      #set $rg_string += $format_read_group("\tKS:", $rg_ks)
-      #set $rg_string += $format_read_group("\tPG:", $rg_pg)
-      #set $rg_string += $format_read_group("\tPI:", $rg_pi)
-      #set $rg_string += $format_read_group("\tPU:", $rg_pu)
+      #set $rg_string = "@RG\\tID:" + str($rg_id)
+      #set $rg_string += $format_read_group("\\tSM:", $rg_sm)
+      #set $rg_string += $format_read_group("\\tPL:", $rg_pl)
+      #set $rg_string += $format_read_group("\\tLB:", $rg_lb)
+      #set $rg_string += $format_read_group("\\tCN:", $rg_cn)
+      #set $rg_string += $format_read_group("\\tDS:", $rg_ds)
+      #set $rg_string += $format_read_group("\\tDT:", $rg_dt)
+      #set $rg_string += $format_read_group("\\tFO:", $rg_fo)
+      #set $rg_string += $format_read_group("\\tKS:", $rg_ks)
+      #set $rg_string += $format_read_group("\\tPG:", $rg_pg)
+      #set $rg_string += $format_read_group("\\tPI:", $rg_pi)
+      #set $rg_string += $format_read_group("\\tPU:", $rg_pu)
   </token>
 
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="0.7.10.039ea20639">bwa</requirement>
+      <requirement type="package" version="1.2">samtools</requirement>
+    </requirements>
+  </xml>
+
   <xml name="stdio">
       <stdio>
           <exit_code range="1:" />