Mercurial > repos > devteam > bwa_wrappers
comparison bwa_wrapper.xml @ 3:b4427dbb6ced draft default tip
Convert tool to use $GALAXY_SLOTS if available.
| author | Nate Coraor <nate@bx.psu.edu> |
|---|---|
| date | Thu, 16 Jan 2014 13:11:51 -0500 |
| parents | 150b3fe44caa |
| children |
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| 2:24fa4e22021a | 3:b4427dbb6ced |
|---|---|
| 4 </requirements> | 4 </requirements> |
| 5 <description></description> | 5 <description></description> |
| 6 <parallelism method="basic"></parallelism> | 6 <parallelism method="basic"></parallelism> |
| 7 <command interpreter="python"> | 7 <command interpreter="python"> |
| 8 bwa_wrapper.py | 8 bwa_wrapper.py |
| 9 --threads="4" | 9 --threads="\${GALAXY_SLOTS:-4}" |
| 10 | 10 |
| 11 #if $input1.ext == "fastqillumina": | 11 #if $input1.ext == "fastqillumina": |
| 12 --illumina1.3 | 12 --illumina1.3 |
| 13 #end if | 13 #end if |
| 14 | 14 |