Mercurial > repos > devteam > cd_hit_dup

diff test-data/cd-hit-dup_in.fastqsanger @ 0:2e150ed1b76e draft

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author devteam
date Wed, 29 Apr 2015 12:06:47 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cd-hit-dup_in.fastqsanger	Wed Apr 29 12:06:47 2015 -0400
@@ -0,0 +1,28 @@
+@A
+CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGCGGGATGGAGGCCTTCGGGTTGTAAACCGCTTTTGATCGGGAGCAAGCCCTTCGGGGTGAGTGTACCCTTCGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGCCCATCGCTTAACGGTGGGTCTGCGCCGGGTACGGGCGGGCTGGAGTGCGGTAGGGGAGACTGGAATTGCCGGTGTAACGGTGGAATGTGTAGATATCGGGAAGAACACCAATGGCGAAGGCAGGTCGCTGGGCCGTCACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCGGGTAGTA
++
+>AAAAAADADBBGGGGGGGGGGFGHHHHHGFHGHHHHHHGGGGEHFHHHHFHHHHGGEFFEFCGGGGGCGGGGGBCF?FHHHHGGHGGGHFHHHCDGGGHHFGHGGGGGGHHHEGEFHHH?DDDG.CGHBGFHHGGGG.;;.BFGFFGGAA?ABFB9FDAFEF/FFFAFFFFDAA.:FBBAB/AAE9ADFFFFDFBFFBFFFB;AF;FFF@EFFFBFFE>AEFFFFFE@B@@B-E@A?DFA-AACF/CAFFAB9------FFA9BAFBA-FEA9;@@A9-.C;9-A-@A@;AEF;FHHCCC@@<GEHGHHHGF111GF<>--//?G?1F/?</HGDG>GF1G>HGHGB/B//GG2F2GE??>111F/GCGHGEF0BEE>//0//E>///F12HFGGGGHGHHGAGCGGHGGEEEE0GGGHGGGGHHGGGGGBGGGF?ADDAFFFAA>11
+@A2
+CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGCGGGATGGAGGCCTTCGGGTTGTAAACCGCTTTTGATCGGGAGCAAGCCCTTCGGGGTGAGTGTACCCTTCGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGCCCATCGCTTAACGGTGGGTCTGCGCCGGGTACGGGCGGGCTGGAGTGCGGTAGGGGAGACTGGAATTGCCGGTGTAACGGTGGAATGTGTAGATATCGGGAAGAACACCAATGGCGAAGGCAGGTCGCTGGGCCGTCACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCGGGTAGTA
++
+>AAAAAADADBBGGGGGGGGGGFGHHHHHGFHGHHHHHHGGGGEHFHHHHFHHHHGGEFFEFCGGGGGCGGGGGBCF?FHHHHGGHGGGHFHHHCDGGGHHFGHGGGGGGHHHEGEFHHH?DDDG.CGHBGFHHGGGG.;;.BFGFFGGAA?ABFB9FDAFEF/FFFAFFFFDAA.:FBBAB/AAE9ADFFFFDFBFFBFFFB;AF;FFF@EFFFBFFE>AEFFFFFE@B@@B-E@A?DFA-AACF/CAFFAB9------FFA9BAFBA-FEA9;@@A9-.C;9-A-@A@;AEF;FHHCCC@@<GEHGHHHGF111GF<>--//?G?1F/?</HGDG>GF1G>HGHGB/B//GG2F2GE??>111F/GCGHGEF0BEE>//0//E>///F12HFGGGGHGHHGAGCGGHGGEEEE0GGGHGGGGHHGGGGGBGGGF?ADDAFFFAA>11
+@B
+CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAAGGACGACGTATTTCGGTATGTAAACTTCTATCAGCAAGGAAGATGATGACGGTACTTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTTGAAACTGTAAGGCTAGATTGCCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTGAATGACGCTGAGGCTCGGAAGCGTGGGGAGCAAACAGGATTAGATACCCCAGTAGTA
++
+>>AAAA>DBBBBEGGGGGGGGGGGHHHHHHHHHHHHHHGGGGHHHGHHHHHHHHHGGGGGGGGGGGGGGHHHGGGGDHHHHHHGGHGHHHHHHHHHHHHHHHHFHHGHHHHHHHHHHHGGGHGHHHHHHHHHHHHHHFGGGGGGGGGFGGGGGGGGGGGGGBBBBFFFFFFFFFFFFFBBBFFFFFFFFFFFFFFFFFFFFFFBDBFFFFFFFFFFFFBFFFFBFBFFFFFFFFFFFFFFFFGFFFFFGGGFFE@A@CCGCHGHGFFG/GD00HHGGDBCBHDCFFFG><-?C<?GHGHHHGGGGGHHGGGD1CF0FGBC/CCAGGFGGEE/GFGBHGF2F1BHFHHHHGHBGEFFGGGFEHGGEECFD12BGFGGGHGHGDFHHGGGGHGHHGGGGGGHGGFGGGHGGGHHFHHFHFGGGGCFGGGGADA@BFFAA>11
+@B2
+CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAAGGACGACGTATTTCGGTATGTAAACTTCTATCAGCAAGGAAGATGATGACGGTACTTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTTGAAACTGTAAGGCTAGATTGCCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTGAATGACGCTGAGGCTCGGAAGCGTGGGGAGCAAACAGGATTAGATACCCCAGTAGTA
++
+>>AAAA>DBBBBEGGGGGGGGGGGHHHHHHHHHHHHHHGGGGHHHGHHHHHHHHHGGGGGGGGGGGGGGHHHGGGGDHHHHHHGGHGHHHHHHHHHHHHHHHHFHHGHHHHHHHHHHHGGGHGHHHHHHHHHHHHHHFGGGGGGGGGFGGGGGGGGGGGGGBBBBFFFFFFFFFFFFFBBBFFFFFFFFFFFFFFFFFFFFFFBDBFFFFFFFFFFFFBFFFFBFBFFFFFFFFFFFFFFFFGFFFFFGGGFFE@A@CCGCHGHGFFG/GD00HHGGDBCBHDCFFFG><-?C<?GHGHHHGGGGGHHGGGD1CF0FGBC/CCAGGFGGEE/GFGBHGF2F1BHFHHHHGHBGEFFGGGFEHGGEECFD12BGFGGGHGHGDFHHGGGGHGHHGGGGGGHGGFGGGHGGGHHFHHFHFGGGGCFGGGGADA@BFFAA>11
+@C
+CCTACGGGCGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGACGGCCTTCGGGTTGTAAAGCTCTGTTAATCGGGACGAAAGGCCTTCTTGCGAATAGTGAGAAGGATTGACGGTACCGGAATAGAAAGCCACGGCTAGCTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATAGGTCAGTCTGTCTTAAAAGTTCGGGGCTTAACCCCGTGATGGGATGGAAACTGCCAATCTAGAGTATCGGAGAGGAAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGACTTTCTGGACGAAAACTGACGCTGAGGCGCGAAAGCCAGGGGAGCGAACGGGATTAGATACCCGGGTAGTC
++
+ABBCCDCCCCCCGGGGGGGGGGGGHHHHHHGGGGGHHHHGGGGGHHHHHHGGGGGHHHGGGGGGGGGGHHHHHHHGGGGGHHHGGHGGGHHHHHHHHHHHHHHHGGGGGGGGGGHHHHHHHHHFG-DGGGGGGGGGGGGGGGFGGGGGGGGGGGFFFFFFFFFFFFFFFFFFBFFFFFFFHFFFFFFFFFFFFFFFHFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF/B/FBFFGFBGFFGGGGFFAGGGGGGGFCGCDAGCGBHHHFFHHHHHGGGHFGD0HHHHHHGGGGGHHHHHHHHHEHHHHHFHHGHHHHHGGGGGHHHHHGGGGGHHHHHHHHGHHHHFHGHGFHHHGGGGHHGGGGGFGGHHHHGGGHGHHGHHGGGGGHHHGGGGGGGHHHHHHGGGGGHGGGHHHFFGGGGGGGGGBBBBFFFBBBA3
+@D
+CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGAGGGATGGAGGCCTTCGGGTTGTAAACCTCTTTTGTTAGGGAGCAAGGCACTTTGTGTTGAGTGTACCTTTCGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCCATCGCTTAACGGTGGATCCGCGCCGGGTACGGGCGGGCTTGAGTGCGGTAGGGGAGACTGGAATTCCCGGTGTAACGGTGGAATGTGTAGATATCGGGAAGAACACCAATGGCGAAGGCAGGTCTCTGGGCCGTTACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCGAGTAGTC
++
+DDDDDDDCCCCFGGGGGGGGGGGGHHHHHHHCHHHHHHHGGGGGHGHHHHHHHHHGGGGGGGGGGGGGHGGHGGGHGGGHHHHGGHGGGHGHHHHHHHHHHHHHHHHHGGHHHGHHHHHGHHHFGHHHHHHHHHHHHHGGFGGHHHFHHGGGGGHHHGGGGGGGFFGGGGGGADFFFEFFFFFFFDFBAFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFDFFFFFF@DFFFFFFFFFFFFFFFFFFFFBDA9.;FFFFFFFFFFFDC@??D9?-?GGGGGGGGFGHEFGGHHGGFCFHHGHFFHHHHHGHHHHGCGGGCFHHGGC?GHHHHGHHHHEHHHHEGEEDFHHHHHGHGHHGF1GGGGHHHHHF3FHFG1HGGGGGEFFHHGGGGGHHHHHGGFGFHGGFEGGGGGGHGGGHHHHFGGGGGGGGGBBBBFBFBBBBB
+@chimeric_read
+CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGACGCCGCGTGCGGGATGGAGGCCTTCGGGTTGTAAACCGCTTTTGATCGGGAGCAAGCCCTTCGGGGTGAGTGTACCCTTCGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCCATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTTGAAACTGTAAGGCTAGATTGCCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTGAATGACGCTGAGGCTCGGAAGCGTGGGGAGCAAACAGGATTAGATACCCCAGTAGTA
++
+FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF