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comparison test-data/rgClustal_testout.log @ 0:7cc64024fe92 draft

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author devteam
date Mon, 27 Jan 2014 09:28:58 -0500
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-1:000000000000 0:7cc64024fe92
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4 CLUSTAL 2.1 Multiple Sequence Alignments
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7 Sequence type explicitly set to DNA
8 Sequence format is Pearson
9 Sequence 1: c_briggsae-chrII_+_/43862-46313 60 bp
10 Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941 60 bp
11 Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087 60 bp
12 Sequence 4: c_elegans-II_+_/9706834-9708803 60 bp
13 Sequence 5: c_briggsae-chrIfooI_+_/43862-46313 60 bp
14 Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941 60 bp
15 Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087 60 bp
16 Sequence 8: c_elegans-II_+_more/9706834-9708803 60 bp
17 Sequence 9: c_briggsae-chrII_+_bar/43862-46313 60 bp
18 Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941 60 bp
19 Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087 60 bp
20 Sequence 12: c_elegans-II_+_meh/9706834-9708803 60 bp
21 Start of Pairwise alignments
22 Aligning...
23
24 Sequences (1:2) Aligned. Score: 80
25 Sequences (1:3) Aligned. Score: 88
26 Sequences (1:4) Aligned. Score: 83
27 Sequences (1:5) Aligned. Score: 21
28 Sequences (1:6) Aligned. Score: 20
29 Sequences (1:7) Aligned. Score: 23
30 Sequences (1:8) Aligned. Score: 18
31 Sequences (1:9) Aligned. Score: 21
32 Sequences (1:10) Aligned. Score: 16
33 Sequences (1:11) Aligned. Score: 25
34 Sequences (1:12) Aligned. Score: 10
35 Sequences (2:3) Aligned. Score: 85
36 Sequences (2:4) Aligned. Score: 86
37 Sequences (2:5) Aligned. Score: 21
38 Sequences (2:6) Aligned. Score: 20
39 Sequences (2:7) Aligned. Score: 25
40 Sequences (2:8) Aligned. Score: 20
41 Sequences (2:9) Aligned. Score: 36
42 Sequences (2:10) Aligned. Score: 16
43 Sequences (2:11) Aligned. Score: 22
44 Sequences (2:12) Aligned. Score: 17
45 Sequences (3:4) Aligned. Score: 85
46 Sequences (3:5) Aligned. Score: 13
47 Sequences (3:6) Aligned. Score: 20
48 Sequences (3:7) Aligned. Score: 25
49 Sequences (3:8) Aligned. Score: 20
50 Sequences (3:9) Aligned. Score: 36
51 Sequences (3:10) Aligned. Score: 16
52 Sequences (3:11) Aligned. Score: 18
53 Sequences (3:12) Aligned. Score: 25
54 Sequences (4:5) Aligned. Score: 13
55 Sequences (4:6) Aligned. Score: 11
56 Sequences (4:7) Aligned. Score: 20
57 Sequences (4:8) Aligned. Score: 10
58 Sequences (4:9) Aligned. Score: 31
59 Sequences (4:10) Aligned. Score: 17
60 Sequences (4:11) Aligned. Score: 29
61 Sequences (4:12) Aligned. Score: 14
62 Sequences (5:6) Aligned. Score: 73
63 Sequences (5:7) Aligned. Score: 83
64 Sequences (5:8) Aligned. Score: 80
65 Sequences (5:9) Aligned. Score: 31
66 Sequences (5:10) Aligned. Score: 14
67 Sequences (5:11) Aligned. Score: 14
68 Sequences (5:12) Aligned. Score: 12
69 Sequences (6:7) Aligned. Score: 80
70 Sequences (6:8) Aligned. Score: 88
71 Sequences (6:9) Aligned. Score: 26
72 Sequences (6:10) Aligned. Score: 16
73 Sequences (6:11) Aligned. Score: 25
74 Sequences (6:12) Aligned. Score: 12
75 Sequences (7:8) Aligned. Score: 78
76 Sequences (7:9) Aligned. Score: 31
77 Sequences (7:10) Aligned. Score: 10
78 Sequences (7:11) Aligned. Score: 12
79 Sequences (7:12) Aligned. Score: 12
80 Sequences (8:9) Aligned. Score: 31
81 Sequences (8:10) Aligned. Score: 10
82 Sequences (8:11) Aligned. Score: 14
83 Sequences (8:12) Aligned. Score: 12
84 Sequences (9:10) Aligned. Score: 63
85 Sequences (9:11) Aligned. Score: 84
86 Sequences (9:12) Aligned. Score: 78
87 Sequences (10:11) Aligned. Score: 64
88 Sequences (10:12) Aligned. Score: 76
89 Sequences (11:12) Aligned. Score: 46
90 Guide tree file created: [infile_copy.dnd]
91
92 There are 11 groups
93 Start of Multiple Alignment
94
95 Aligning...
96 Group 1: Sequences: 2 Score:1045
97 Group 2: Sequences: 2 Score:1016
98 Group 3: Sequences: 4 Score:1001
99 Group 4: Sequences: 2 Score:313
100 Group 5: Sequences: 2 Score:731
101 Group 6: Sequences: 4 Score:516
102 Group 7: Sequences: 8 Score:344
103 Group 8: Sequences: 2 Score:1016
104 Group 9: Sequences: 2 Score:1054
105 Group 10: Sequences: 4 Score:945
106 Group 11: Sequences: 12 Score:380
107 Alignment Score 6283
108
109 CLUSTAL-Alignment file created [/share/shared/galaxy/database/files/002/dataset_2801.dat]
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112 Clustal created the following dnd file for your information:
113 (
114 (
115 c_briggsae-chrII_+_/43862-46313:0.07349,
116 c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317)
117 :0.02387,
118 (
119 c_remanei-Crem_Contig172_-_/123228-124941:0.06114,
120 c_elegans-II_+_/9706834-9708803:0.07219)
121 :0.01779,
122 (
123 (
124 (
125 c_briggsae-chrIfooI_+_/43862-46313:0.10368,
126 c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298)
127 :0.01654,
128 (
129 c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765,
130 c_elegans-II_+_more/9706834-9708803:0.05902)
131 :0.06262)
132 :0.31533,
133 (
134 (
135 c_briggsae-chrII_+_bar/43862-46313:0.02327,
136 c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463)
137 :0.05016,
138 (
139 c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667,
140 c_elegans-II_+_meh/9706834-9708803:0.11737)
141 :0.12013)
142 :0.20951)
143 :0.30133);
144